GgaEX1051699 @ galGal4
Exon Skipping
Gene
ENSGALG00000002294 | SEMA6A
Description
Semaphorin-6A isoform4 [Source:UniProtKB/TrEMBL;Acc:E1C1C2]
Coordinates
chrZ:72449509-72453688:+
Coord C1 exon
chrZ:72449509-72449599
Coord A exon
chrZ:72452453-72452572
Coord C2 exon
chrZ:72453600-72453688
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTCCTTCCTCCCCAGAGG
3' ss Score
10.92
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
Exon sequences
Seq C1 exon
ATGGATACACTGGAGTTCCTGGGAGATGAGTTCAGTGGAATGGCCAGGTGCCCCTACGATGCAAAGCATGCCAACGTTGCGTTGTTCGCGG
Seq A exon
AGGGAAAGCTGTATTCTGCCACAGTGACCGACTTCCTTGCGATAGATGCAGTCATATACCGGAGCCTTGGAGAAAGCCCAACTCTGCGGACAGTGAAACATGACTCAAAGTGGTTGAAAG
Seq C2 exon
AACCATACTTTGTCCAGGCAGTGGACTACGGCAATTATATTTACTTCTTCTTCCGGGAAATAGCAGTGGAGTACAACAGCATGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002294-'17-13,'17-12,19-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.0=100)
A:
PF0140314=Sema=FE(11.0=100)
C2:
PF0140314=Sema=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATACACTGGAGTTCCTGGG
R:
TTTCCCATGCTGTTGTACTCCAC
Band lengths:
178-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]