MmuEX6001492 @ mm10
Exon Skipping
Gene
ENSMUSG00000019647 | Sema6a
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:MGI Symbol;Acc:MGI:1203727]
Coordinates
chr18:47291096-47294110:-
Coord C1 exon
chr18:47294020-47294110
Coord A exon
chr18:47291888-47292007
Coord C2 exon
chr18:47291096-47291184
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCTTTTTCTTCTAAGATG
3' ss Score
8.66
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTCGATACCTTGGAAACTTTTGGGGATGAATTTAGCGGAATGGCCAGATGCCCTTATGATGCCAAACATGCCAACATCGCTCTGTTTGCAG
Seq A exon
ATGGAAAACTCTACTCGGCTACAGTGACTGACTTTCTGGCCATTGATGCAGTCATTTACAGGAGCCTCGGAGACAGCCCTACCCTCAGGACTGTCAAGCATGATTCAAAGTGGTTGAAAG
Seq C2 exon
AGCCGTACTTTGTCCAAGCCGTGGATTATGGGGACTATATCTACTTCTTCTTCAGAGAAATTGCAGTAGAATACAACACTATGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019647-'16-12,'16-11,18-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(18.6=100)
A:
PF0140314=Sema=FE(10.3=100)
C2:
PF0140314=Sema=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATACCTTGGAAACTTTTGGGG
R:
TTCCCCATAGTGTTGTATTCTACTGC
Band lengths:
178-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types