DreEX0065159 @ danRer10
Exon Skipping
Gene
ENSDARG00000011533 | sema6dl
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like [Source:ZFIN;Acc:ZDB-GENE-050417-171]
Coordinates
chr18:40383362-40385414:+
Coord C1 exon
chr18:40383362-40383452
Coord A exon
chr18:40384915-40385034
Coord C2 exon
chr18:40385326-40385414
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTAACCTATTTGTTTGTCAGATG
3' ss Score
7.83
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TTGGATAACCTGGAATTTGATGGGGAAGAGATCAGCGGTTTGGCCCGATGCCCGTTTGACGCTAAGCAGACAAACGTTGCCCTGTTTGCCG
Seq A exon
ATGGTAAGCTGTACTCTGCTACGGTGGCAGACTTCCTGGCTAGCGATGCTGTGATTTATCGCAGTATGGGAGATGGTTCTGCCCTTCGCACTATCAAGTATGACTCCAAGTGGTTGAAAG
Seq C2 exon
AGCCACATTTTCTTCACGCTGTGGACTACGGGGATTTTGTCTACTTCTTCTTTAGAGAAATTGCAGCAGAGCACAACAACTTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011533-'7-10,'7-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PD(30.9=77.8)
A:
PF0140314=Sema=FE(9.3=100)
C2:
PF0140314=Sema=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATAACCTGGAATTTGATGGGG
R:
TTTCCCAAGTTGTTGTGCTCTG
Band lengths:
178-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]