RnoEX6018832 @ rn6
Exon Skipping
Gene
ENSRNOG00000004812 | Sema6d
Description
semaphorin 6D [Source:RGD Symbol;Acc:1310910]
Coordinates
chr3:116945483-116946954:+
Coord C1 exon
chr3:116945483-116945573
Coord A exon
chr3:116946025-116946144
Coord C2 exon
chr3:116946866-116946954
Length
120 bp
Sequences
Splice sites
3' ss Seq
AATTATAACTTTGGTTTCAGATG
3' ss Score
7.37
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
TTGAGTACCTTAGAGTATGATGGGGAAGAAATTAGTGGCCTGGCACGGTGCCCGTTTGATGCCCGACAAACCAATGTTGCCCTCTTTGCTG
Seq A exon
ATGGGAAACTGTATTCTGCCACAGTGGCTGATTTCCTGGCCAGTGATGCTGTCATTTACAGAAGCATGGGTGATGGATCGGCCCTCCGCACAATAAAATACGACTCCAAATGGATCAAAG
Seq C2 exon
AACCACACTTTCTTCACGCCATAGAATATGGAAACTATGTCTATTTCTTCTTCAGAGAAATCGCCGTGGAACATAATAACTTAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004812-'21-16,'21-14,23-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.4=100)
A:
PF0140314=Sema=FE(9.9=100)
C2:
PF0140314=Sema=FE(7.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGTACCTTAGAGTATGATGGGGA
R:
TGCCTAAGTTATTATGTTCCACGGC
Band lengths:
178-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]