RnoEX0079379 @ rn6
Exon Skipping
Gene
ENSRNOG00000004033 | Sema6a
Description
semaphorin 6A [Source:RGD Symbol;Acc:1305493]
Coordinates
chr18:41374386-41377354:-
Coord C1 exon
chr18:41377264-41377354
Coord A exon
chr18:41375161-41375280
Coord C2 exon
chr18:41374386-41374474
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCCCTCCTTTTTCTCCTAAGATG
3' ss Score
8.85
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGGATACTTTGGAAACTTTTGGGGATGAATTTAGTGGAATGGCCAGATGCCCTTATGATGCCAAACATGCCAACATCGCTCTGTTTGCAG
Seq A exon
ATGGGAAACTGTACTCGGCCACAGTGACTGACTTTCTGGCCATTGATGCGGTCATTTACAGGAGCCTTGGAGACAGTCCTACCCTCAGGACTGTCAAGCATGATTCAAAGTGGTTGAAAG
Seq C2 exon
AGCCGTACTTTGTCCAAGCAGTGGATTACGGAGACTATATCTACTTCTTCTTCAGAGAAATTGCAGTAGAGTACAACACTATGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004033-'6-7,'6-5,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(6.9=100)
A:
PF0140314=Sema=FE(9.2=100)
C2:
PF0140314=Sema=FE(6.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATACTTTGGAAACTTTTGGGG
R:
TCCCCATAGTGTTGTACTCTACTGC
Band lengths:
178-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]