GgaEX1052019 @ galGal4
Exon Skipping
Gene
ENSGALG00000017006 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr1:168516340-168518816:+
Coord C1 exon
chr1:168516340-168516424
Coord A exon
chr1:168517597-168517699
Coord C2 exon
chr1:168518485-168518816
Length
103 bp
Sequences
Splice sites
3' ss Seq
TATTTTTGTTCTGTTTCAAGGAA
3' ss Score
8.3
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
AATTCATCCAAGGAATTTGAATACTGCAGCCACGAGAAGGCTTGGAACTAGAATAGCTGTTGTGGATAATCACCAGCTGAAAATG
Seq A exon
GAAGTCGATACACTGGTGCACAGTGCTGGCTCAGATGAAGATAATAGTTCTCAGCCTCAGCAGTCAAGTGAAACAGAACTGACAAGTGGGACAAACAAAGAAA
Seq C2 exon
GATCCTCCCAGAAGCAGAGGGTAGAAGACCTGGTGGAAGTTGGACAGACGGAGCCTGCTGAAATGGACAGTGCTGAATGCAGAAGGAAGAGTCTGTCTCTGAAGGGTGTTGCTTGTGGCAGATCAGACGTGCTGAACGATAAATACGTTGTGAAGCCATCCACAAAGGTTCTACAAAAAGCTGACTGCGTAGAGGAAGCTCACAGACAGGCAAAACAAGGCATATTTTGTGTGGAAGCAGACGGTGACAGAACGCTTCTGAAGAATGCTAACAATGAAAATATCTATATACTAGATGCCACAAAAGAAGGAAATGTGGGTCGTTTTCTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017006_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.552 A=1.000 C2=0.261
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(12.8=100)
A:
PF0085623=SET=FE(15.6=100)
C2:
PF0085623=SET=PD(28.4=55.9),PF0085623=SET=PU(39.7=26.1)
Main Skipping Isoform:
ENSGALT00000027470fB11840
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGAGAAGGCTTGGAACTA
R:
TGAGCTTCCTCTACGCAGTCA
Band lengths:
258-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]