MmuEX6041865 @ mm10
Exon Skipping
Gene
ENSMUSG00000071350 | Setdb2
Description
SET domain, bifurcated 2 [Source:MGI Symbol;Acc:MGI:2685139]
Coordinates
chr14:59409178-59412811:-
Coord C1 exon
chr14:59412712-59412811
Coord A exon
chr14:59412091-59412184
Coord C2 exon
chr14:59409178-59409518
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTATTTTCTTTGAAGGGA
3' ss Score
9.09
5' ss Seq
ACGGTAGGC
5' ss Score
8.81
Exon sequences
Seq C1 exon
GGAAATGAACCATAGAAATATTTCAAGAACTCAGCATCATTCAGTCATTAGAAGAACTAAATCCAAGACAACTGTTTTTCATTACAGTGAGAAAAACATG
Seq A exon
GGATTTGTTTGCTCAGATTCTGCCGCCCCAGAAGATAAGAATGGATTTAAACCAGCTCAAGAACACGTGAACTCTGAAGCTAGGAGAGCTCACG
Seq C2 exon
AGGACTTAAGTTCAAACCCAGCTGGAGATTCTGAAGACACACAGCTGACTGAATCAGACGTGATAGATATAACTGCAAGTAGAGAAGACTCTGCCCCAGCATACAGGTGTAAGCACGCAACCATAGTGGATCGTAAGGACACTAAACAGGTGCTTGAAGTCCCAGGAAAGAAGTCCCAAGAGGAAGAGCCTGCAGCCTCTCAAAGCCAGCAGGCCTTGTGTGATGAGGAGCTGCCAAGTGAGAGGACAAAGATTCCATCTGCTTCCCTGATGCAGCTCAGTAAGGAGAGTCTGTTTCTATTGGATGCTTCAAAAGAAGGAAATGTGGGCCGTTTCCTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071350-'21-18,'21-17,22-18=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.647 A=0.729 C2=0.588
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(10.7=100)
A:
PF0085623=SET=FE(10.1=100)
C2:
PF0085623=SET=FE(36.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAACTCAGCATCATTCAGTCA
R:
TGCTGGGGCAGAGTCTTCTC
Band lengths:
179-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types