RnoEX6051960 @ rn6
Exon Skipping
Gene
ENSRNOG00000021680 | Setdb2
Description
SET domain, bifurcated 2 [Source:RGD Symbol;Acc:2319564]
Coordinates
chr15:39718137-39721714:-
Coord C1 exon
chr15:39721615-39721714
Coord A exon
chr15:39720887-39720980
Coord C2 exon
chr15:39718137-39718477
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTACTTTCTTTGAAGGGA
3' ss Score
9.21
5' ss Seq
ACGGTAGGC
5' ss Score
8.81
Exon sequences
Seq C1 exon
GGAAATGAATAATAGAAATATTTCAAGAACTCAGCGTCATTCAGTCATTAGAAGACCTAAATCCAAGACAGATGTTTTTCATTACAATGAGAAAAACATG
Seq A exon
GGATTCGTTTGCTCATATTCTGCTGCCCCAGAAGAGAAGAATGGATTTAAACCAGCTCAAGAACACCTGGACTCTAAAGCTAGGAGAGCTCACG
Seq C2 exon
AGGACTTAAGTTCAAGCCAAGTTGGATATTCTGAAGACAAGCAGCTGACTGAATCAGATGTGATAGATACAACTACCAGTAGAGAAGACACTTCCCCAGCATACGGGTGTAAGCACGCAGCCATATTGAATAGTAAGAACACTAAAAAAGTGCTTGAAGTCCCCGTAAAAACGTCCCAAGAGGAAGAGCCTGCAGCCTCTCAAAGCCAGCAGGTCTCGTGTGGTGAGGAGCTGGCAAGTGAAAGGACAAAGATTCCATCTGCTTCCCTGGTGCAGCTCAGTAAGGAGAGTCTGTTTCTATTGGATGCTTCAAAAGAAGGAAATGTGGGCCGTTTCCTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021680-'19-22,'19-19,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=0.695 C2=0.579
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(10.7=100)
A:
PF0085623=SET=PD(18.2=84.4)
C2:
PF0085623=SET=FE(36.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTCAGCGTCATTCAGTCA
R:
TGCTGGGGAAGTGTCTTCTCT
Band lengths:
176-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]