GgaEX1053580 @ galGal3
Exon Skipping
Gene
ENSGALG00000011224 | SLC4A3
Description
NA
Coordinates
chr7:23593639-23595171:-
Coord C1 exon
chr7:23595023-23595171
Coord A exon
chr7:23594308-23594502
Coord C2 exon
chr7:23593639-23593845
Length
195 bp
Sequences
Splice sites
3' ss Seq
TGTTACCCTTTCCATTTCAGTTC
3' ss Score
10.79
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
Exon sequences
Seq C1 exon
GAGAGAAAACTGAGGGTCTCATGGGGGTCTCCGAGCTGATAATCTCCACCTCGGTTTTAGGGATCCTCTTCTCCCTGCTTGGAGCCCAGCCGCTCCTGGTCATTGGCTTCTCAGGGCCTCTGCTGGTGTTTGAAGAAGCTTTTTACAAG
Seq A exon
TTCTGCCAGACACAAGGCATTGAGTACCTGACAGGCAGAGTGTGGATTGGTTTGTGGCTCATCGTTTTCATCTTCATTATTGTGGCAGCTGAAGGAAGCTTCTTGGTGCGCTATATCTCGCCCTTCACCCAGGAGATCTTTGCTTTCCTCATCTCCCTCATCTTCATCTACGAGACCTTCTACAAACTGTACAAG
Seq C2 exon
GTGTTTGCAGAACATCCTCTGCTGAAGTTTTACCCACCAAACGTGCAGGGCGGCCTGAACGCCAGCATGCTCTCTGCAGATGCCATGTCACTGGGAATCAGGATGCAGCCCAACACTGCTCTCCTCTCCCTCATCCTCATGCTAGGCACCTTCTTCATTGCCTTCTTTATGCGCAAGTTCAAAAACAGCCGCTTCTTAGGAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224-'20-25,'20-24,21-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(24.7=100)
A:
PF0095516=HCO3_cotransp=FE(32.3=100)
C2:
PF0095516=HCO3_cotransp=PD(12.6=36.2),PF0095516=HCO3_cotransp=PU(18.6=79.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGGTCATTGGCTTCTC
R:
GGCTGTTTTTGAACTTGCGCA
Band lengths:
248-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]