GgaEX1053580 @ galGal4
Exon Skipping
Gene
ENSGALG00000011224 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr7:21505873-21507405:-
Coord C1 exon
chr7:21507257-21507405
Coord A exon
chr7:21506542-21506736
Coord C2 exon
chr7:21505873-21506079
Length
195 bp
Sequences
Splice sites
3' ss Seq
TGTTACCCTTTCCATTTCAGTTC
3' ss Score
10.79
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
Exon sequences
Seq C1 exon
GAGAGAAAACTGAGGGTCTCATGGGGGTCTCCGAGCTGATAATCTCCACCTCGGTTTTAGGGATCCTCTTCTCCCTGCTTGGAGCCCAGCCGCTCCTGGTCATTGGCTTCTCAGGGCCTCTGCTGGTGTTTGAAGAAGCTTTTTACAAG
Seq A exon
TTCTGCCAGACACAAGGCATTGAGTACCTGACAGGCAGAGTGTGGATTGGTTTGTGGCTCATCGTTTTCATCTTCATTATTGTGGCAGCTGAAGGAAGCTTCTTGGTGCGCTATATCTCGCCCTTCACCCAGGAGATCTTTGCTTTCCTCATCTCCCTCATCTTCATCTACGAGACCTTCTACAAACTGTACAAG
Seq C2 exon
GTGTTTGCAGAACATCCTCTGCTGAAGTTTTACCCACCAAACGTGCAGGGCGGCCTGAACGCCAGCATGCTCTCTGCAGATGCCATGTCACTGGGAATCAGGATGCAGCCCAACACTGCTCTCCTCTCCCTCATCCTCATGCTAGGCACCTTCTTCATTGCCTTCTTTATGCGCAAGTTCAAAAACAGCCGCTTCTTAGGAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224-'28-34,'28-32,29-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(24.7=100)
A:
PF0095516=HCO3_cotransp=FE(32.3=100)
C2:
PF0095516=HCO3_cotransp=PD(12.6=36.2),PF0095516=HCO3_cotransp=PU(18.6=79.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGGTCATTGGCTTCTC
R:
GGCTGTTTTTGAACTTGCGCA
Band lengths:
248-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]