DreEX6095874 @ danRer10
Exon Skipping
Gene
ENSDARG00000052330 | slc4a2b
Description
solute carrier family 4 (anion exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-030429-14]
Coordinates
chr24:33393369-33396065:-
Coord C1 exon
chr24:33395917-33396065
Coord A exon
chr24:33394862-33395056
Coord C2 exon
chr24:33393369-33393617
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCTACCCTCATCTTCTCCAGTTC
3' ss Score
8.33
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
GTGAGAAGACTGAAGGGCTGCTCGGTGTGTCGGAGCTGATCGTGGCCACGTGTGTTCAGGGTGTGCTGTTCTGTCTGCTGGGGGCTCAGCCTCTGCTCATTGTGGGCTTTTCTGGACCAATACTGGTGTTTGAAGAAGCCTTCTTCTCT
Seq A exon
TTCTGTAAGGGCAATAATATGGAGTACCTGACGGGGCGGGTCTGGATTGGTTTTTGGCTCATCATCATCGTGGTGTTGATGGTGGCGTTTGAGGGAAGTTTCATGGTCCGATTCGTCTCCCGTTTCACCCAAGAGATCTTCTCCTTCCTCATCTCGCTCATCTTCATCTATGAGACCTTCTCAAAGCTGGCTAAG
Seq C2 exon
ATTTTCCAGGAGCATCCTCTGCAGCGCTGCTCTGCTGTGCTTGTGGACGTCAGAAACTCCTCGCTGAACTCCAGCATGGATGAAGTGACGGAAAGTCCATTAGCAGTTACGAACAGCAGTTCACAGGAGATGCTGAAGGTGGTGGGGGAACCAAACACTGCTCTGCTGTCATTAGTGCTCATGTCTGGCACCTTCCTCATCGCTTTTTACCTGCGCAAGTTCAAGAACAGCGCCTTCTTCCCGGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052330-'19-21,'19-19,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.002
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(9.9=100)
A:
PF0095516=HCO3_cotransp=FE(13.0=100)
C2:
PF0095516=HCO3_cotransp=PU(25.7=96.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTCAGGGTGTGCTGTTC
R:
ACCACCTTCAGCATCTCCTGT
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]