BtaEX6029540 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011226 | SLC4A2
Description
solute carrier family 4 (anion exchanger), member 2 [Source:HGNC Symbol;Acc:HGNC:11028]
Coordinates
chr4:114447137-114448423:+
Coord C1 exon
chr4:114447137-114447285
Coord A exon
chr4:114447449-114447643
Coord C2 exon
chr4:114448169-114448423
Length
195 bp
Sequences
Splice sites
3' ss Seq
CCTCGCCCTGCCTGCCCCAGTTC
3' ss Score
7.49
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGGAGAAGACGCATGACCTGATCGGAGTGTCGGAGCTCATCATGTCCACAGCCATCCAGGGCGTGCTTTTCTGCCTGTTGGGGGCCCAGCCATTGTTGGTGATTGGCTTCTCCGGGCCCCTGCTGGTCTTCGAGGAGGCCTTCTTCTCG
Seq A exon
TTCTGCAGCAGCAACAACCTGGAGTACCTGGTGGGCCGTGTGTGGATCGGCCTCTGGCTGGTGCTGCTGGCCCTGCTCATGGTGGCCCTGGAGGGCAGCTTCTTGGTGCGCTTCGTCTCCCGTTTCACCCAGGAGATCTTTGCCTTCCTCATCTCGCTCATCTTCATCTATGAGACCTTCTACAAGCTGGTGAAG
Seq C2 exon
ATCTTCCAGGAGCACCCCCTCCACGGCTGTTCCGTCTCCAACAGCTCCGAGGCAGGCAGTGGCGAAAATGCCACGTGGCCCGGGGCAGGAGCCACACTGGGGCCAAGGAACGAGAGCTCAGCCAGGCCGCCTGGGCAGGGCAGGCCCCGGGGCCAGCCCAACACCGCCCTGCTGTCGCTGGTTCTCATGGCCGGCACCTTCTTCATCGCCTTCTTCCTGCGCAAATTCAAGAACAGCCGGTTCTTCCCCGGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011226-'17-22,'17-20,18-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.224
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(9.9=100)
A:
PF0095516=HCO3_cotransp=FE(12.9=100)
C2:
PF0095516=HCO3_cotransp=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTCGAGGAGGCCTTCTT
R:
GAATTTGCGCAGGAAGAAGGC
Band lengths:
253-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]