GgaEX7001513 @ galGal4
Exon Skipping
Gene
ENSGALG00000028756 | SLC4A2
Description
anion exchange protein 2 [Source:RefSeq peptide;Acc:NP_990294]
Coordinates
chr2:286527-287226:-
Coord C1 exon
chr2:287078-287226
Coord A exon
chr2:286815-287009
Coord C2 exon
chr2:286527-286742
Length
195 bp
Sequences
Splice sites
3' ss Seq
TGACCCCATCTGTGCTGCAGTTC
3' ss Score
6.46
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGGAGAAGACGCAGGACCTGATCGGGGTGTCGGAGCTGATCATCTCCACGTCGCTGCAGGGCGTGCTGTTCTGCCTGCTGGGCGCGCAGCCCCTGCTTGTCATTGGCTTCTCGGGGCCGCTGCTCGTCTTCGAGGAGGCCTTCTTCACG
Seq A exon
TTCTGCACGTCCAACGGGCTGGAGTACCTGGTGGGGCGCGTGTGGATCGGCTTCTGGCTCATCCTGATCGTGCTGCTGATGGTGGCCTGCGAGGGCAGCTTCCTGGTGCGCTTCGTCTCACGCTTCACCCAGGAGATCTTCGCCTTCCTCATCTCCCTCATCTTCATCTACGAGACCTTCTCCAAGCTGGGCAAG
Seq C2 exon
ATCTTCCAGGAGCACCCCCTGCACGGCTGCGCTCAGCCCAACGGCACCACGTGGAGCAACGGCACCGCGGCACCCAACGGCACGGCGCAGCGCGGGGCCGCCAAAGTGACGGGGCAGCCCAACACGGCGCTGCTCTCCCTGGTGCTCATGGCCGGCACCTTCTTCATCGCCTTCTTCCTGCGCAAGTTCAAGAACAGCCGCTTCTTCCCCGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028756-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(24.1=100)
A:
PF0095516=HCO3_cotransp=FE(31.5=100)
C2:
PF0095516=HCO3_cotransp=PD(14.8=41.7),PF0095516=HCO3_cotransp=PU(19.2=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCTTGTCATTGGCTTCT
R:
GCTGTTCTTGAACTTGCGCAG
Band lengths:
257-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]