RnoEX0082804 @ rn6
Exon Skipping
Gene
ENSRNOG00000014347 | Slc4a2
Description
solute carrier family 4 member 2 [Source:RGD Symbol;Acc:3711]
Coordinates
chr4:7266690-7269862:-
Coord C1 exon
chr4:7269714-7269862
Coord A exon
chr4:7269434-7269628
Coord C2 exon
chr4:7266690-7266932
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTCCCACCTTTCCTGCTTAGTTC
3' ss Score
8.11
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGGAGAAGACACAGGACCTGATAGGAGTGTCAGAGCTGATCATGTCCACAGCGCTCCAGGGAGTGATCTTCTGCCTGCTGGGCGCCCAGCCACTGCTGGTGATCGGCTTCTCGGGGCCTCTGCTGGTCTTCGAGGAGGCCTTCTTCTCG
Seq A exon
TTCTGCAAGAGCAACCAGTTGGAGTACTTGGTGGGCCGAGTTTGGATTGGCTTCTGGCTGGTGCTCCTGGCCCTGCTCATGGTGGCTCTGGAGGGGAGCTTCCTGGTCCGCTTTGTCTCCCGATTCACCCAGGAGATCTTTGCCTTCCTCATATCACTCATCTTCATCTATGAGACCTTCTATAAGCTGATCAAG
Seq C2 exon
ATCTTTCAGGAGCACCCCCTCCATGGCTGCTCAGTCTCCAACGACTCAGAGGCAGACAGCAGCAGTAACAATATGACTTGGGCAGCAACCACACTGGCACCAGACAACAGCAGTGCGTCTGGGCAGGAGAGGCCCCGGGGCCAGCCTAACACTGCCTTGCTATCACTGGTGCTGATGGCCGGCACTTTCTTCATCGCCTTCTTCCTGCGCAAATTCAAGAACAGCCGGTTCTTCCCTGGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014347-'33-22,'33-18,34-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.099
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.0=100)
A:
PF0095516=HCO3_cotransp=FE(13.0=100)
C2:
PF0095516=HCO3_cotransp=FE(16.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTCGAGGAGGCCTTCTT
R:
CCGGCTGTTCTTGAATTTGCG
Band lengths:
253-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]