MmuEX6016343 @ mm10
Exon Skipping
Gene
ENSMUSG00000028962 | Slc4a2
Description
solute carrier family 4 (anion exchanger), member 2 [Source:MGI Symbol;Acc:MGI:109351]
Coordinates
chr5:24435842-24438949:+
Coord C1 exon
chr5:24435842-24435990
Coord A exon
chr5:24436077-24436271
Coord C2 exon
chr5:24438695-24438949
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTCCCACCTTTCCTACTCAGTTC
3' ss Score
8.02
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GGGAGAAGACAAAGGACCTGATAGGAGTGTCAGAGCTGATCATGTCCACAGCGCTGCAGGGAGTGGTCTTCTGCCTGCTGGGGGCTCAGCCCCTGCTGGTCATCGGCTTTTCTGGGCCTCTGCTGGTCTTCGAGGAGGCCTTCTTCTCG
Seq A exon
TTCTGCAGTAGCAATGAGTTGGAGTACTTGGTGGGCCGAGTGTGGATTGGCTTCTGGCTGGTGTTCCTGGCCCTGCTCATGGTGGCTCTGGAGGGGAGCTTCCTGGTCCGCTTTGTATCCCGATTCACCCAGGAGATCTTTGCCTTCCTCATATCACTCATCTTCATCTACGAGACCTTCTATAAGCTGATCAAG
Seq C2 exon
ATCTTCCAGGAGCACCCACTCCATGGCTGCTCAGGCTCCAACGACTCAGAGGCAGGCAGCAGCAGCAGCAGCAATATGACATGGGCAACAACCATACTGGTACCAGACAACAGCAGCGCTTCTGGGCAGTCTGGGCAGGAGAAGCCCCGGGGCCAGCCCAACACAGCTTTGCTATCGCTGGTGCTAATGGCTGGCACTTTCTTCATTGCCTTCTTCCTGCGCAAGTTCAAGAACAGCCGGTTCTTCCCTGGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028962-'35-47,'35-39,44-47=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.082
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(9.9=100)
A:
PF0095516=HCO3_cotransp=FE(12.9=100)
C2:
PF0095516=HCO3_cotransp=FE(16.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCGAGGAGGCCTTCTTCT
R:
TGTTCTTGAACTTGCGCAGGA
Band lengths:
258-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types