HsaEX0059794 @ hg38
Exon Skipping
Gene
ENSG00000164889 | SLC4A2
Description
solute carrier family 4 member 2 [Source:HGNC Symbol;Acc:HGNC:11028]
Coordinates
chr7:151071689-151074293:+
Coord C1 exon
chr7:151071689-151071837
Coord A exon
chr7:151071942-151072136
Coord C2 exon
chr7:151074039-151074293
Length
195 bp
Sequences
Splice sites
3' ss Seq
CTGACTGCCCCTCCCTCCAGTTC
3' ss Score
10.68
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GAGAGAAGACGCAGGACCTGATAGGGGTGTCGGAGCTGATTATGTCCACAGCGCTCCAGGGCGTGGTCTTCTGCCTGCTGGGTGCCCAGCCCCTGTTGGTGATCGGCTTCTCAGGGCCCCTGCTGGTCTTTGAGGAGGCCTTCTTCTCG
Seq A exon
TTCTGTAGCAGCAACCACCTGGAGTACCTGGTGGGCCGTGTGTGGATCGGCTTCTGGCTGGTGTTCCTGGCCCTGCTCATGGTGGCCCTGGAGGGGAGCTTCCTGGTCCGCTTCGTCTCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACTCATCTTCATCTATGAGACCTTCTACAAGCTGGTGAAG
Seq C2 exon
ATCTTCCAGGAGCACCCCCTGCATGGCTGCTCAGCCTCCAACAGCTCAGAGGTGGACGGCGGTGAGAACATGACATGGGCCGGGGCAAGACCCACGCTGGGGCCGGGCAACAGGAGCTTGGCTGGGCAGTCTGGGCAGGGGAAGCCCCGGGGCCAGCCCAACACGGCCCTGCTGTCGCTGGTGCTCATGGCCGGCACCTTCTTCATCGCCTTCTTCCTGCGCAAATTCAAGAACAGCCGGTTCTTTCCTGGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164889-'36-43,'36-40,37-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(9.9=100)
A:
PF0095516=HCO3_cotransp=FE(12.9=100)
C2:
PF0095516=HCO3_cotransp=FE(16.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTTTGAGGAGGCCTTCT
R:
GAATTTGCGCAGGAAGAAGGC
Band lengths:
254-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development