MmuEX6016343 @ mm9
Exon Skipping
Gene
ENSMUSG00000028962 | Slc4a2
Description
solute carrier family 4 (anion exchanger), member 2 [Source:MGI Symbol;Acc:MGI:109351]
Coordinates
chr5:23941660-23944767:+
Coord C1 exon
chr5:23941660-23941808
Coord A exon
chr5:23941895-23942089
Coord C2 exon
chr5:23944513-23944767
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTCCCACCTTTCCTACTCAGTTC
3' ss Score
8.02
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GGGAGAAGACAAAGGACCTGATAGGAGTGTCAGAGCTGATCATGTCCACAGCGCTGCAGGGAGTGGTCTTCTGCCTGCTGGGGGCTCAGCCCCTGCTGGTCATCGGCTTTTCTGGGCCTCTGCTGGTCTTCGAGGAGGCCTTCTTCTCG
Seq A exon
TTCTGCAGTAGCAATGAGTTGGAGTACTTGGTGGGCCGAGTGTGGATTGGCTTCTGGCTGGTGTTCCTGGCCCTGCTCATGGTGGCTCTGGAGGGGAGCTTCCTGGTCCGCTTTGTATCCCGATTCACCCAGGAGATCTTTGCCTTCCTCATATCACTCATCTTCATCTACGAGACCTTCTATAAGCTGATCAAG
Seq C2 exon
ATCTTCCAGGAGCACCCACTCCATGGCTGCTCAGGCTCCAACGACTCAGAGGCAGGCAGCAGCAGCAGCAGCAATATGACATGGGCAACAACCATACTGGTACCAGACAACAGCAGCGCTTCTGGGCAGTCTGGGCAGGAGAAGCCCCGGGGCCAGCCCAACACAGCTTTGCTATCGCTGGTGCTAATGGCTGGCACTTTCTTCATTGCCTTCTTCCTGCGCAAGTTCAAGAACAGCCGGTTCTTCCCTGGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028962-'32-30,'32-27,33-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.082
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(9.9=100)
A:
PF0095516=HCO3_cotransp=FE(12.9=100)
C2:
PF0095516=HCO3_cotransp=FE(16.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCGAGGAGGCCTTCTTCT
R:
TGTTCTTGAACTTGCGCAGGA
Band lengths:
258-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: