RnoEX6040507 @ rn6
Exon Skipping
Gene
ENSRNOG00000020138 | Slc4a3
Description
solute carrier family 4 member 3 [Source:RGD Symbol;Acc:3712]
Coordinates
chr9:82750394-82751391:+
Coord C1 exon
chr9:82750394-82750542
Coord A exon
chr9:82750729-82750923
Coord C2 exon
chr9:82751173-82751391
Length
195 bp
Sequences
Splice sites
3' ss Seq
CCAATCTCCTTACTATCTAGTTC
3' ss Score
6.41
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GAGAGAAGACTGAGGGGCTGATGGGTGTGTCAGAGCTGATTGTGTCCACGGCTGTGCTTGGGGTTCTCTTCTCTCTGCTGGGGGCCCAGCCGCTGCTCGTGGTGGGCTTCTCTGGCCCTCTGCTGGTCTTCGAAGAAGCTTTCTTCAAG
Seq A exon
TTCTGCCGAGCTCAGGACCTGGAATACCTCACCGGTCGAGTGTGGGTGGGCCTCTGGCTGGTGGTCTTCGTCCTGGCCCTGGTGGCGGCTGAGGGCAGCTTCCTTGTCCGCTACATCTCGCCATTTACCCAGGAGATCTTCGCTTTCCTCATCTCACTAATTTTCATCTATGAGACTTTCCACAAGCTCTATAAG
Seq C2 exon
GTGTTCACAGAGCATCCTTTGCTGCCCTTCTACCCACCGGAGGAGGCCCTGGAGCCTGGCTTGGAACTGAATAGTAGTGCCCTGCCCCCCACAGAGGGACCACCAGGTCCCCGGAACCAGCCCAATACAGCTCTGCTGTCCCTCATCCTCATGCTGGGGACTTTCCTCATTGCCTTCTTCCTGCGAAAGTTCAGGAACAGCCGCTTCCTGGGGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020138-'28-37,'28-35,29-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.164
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(24.9=100)
A:
PF0095516=HCO3_cotransp=FE(32.5=100)
C2:
PF0095516=HCO3_cotransp=PD(12.2=32.9),PF0095516=HCO3_cotransp=PU(19.7=80.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCTTCTCTCTGCTGGGGG
R:
AAGTCCCCAGCATGAGGATGA
Band lengths:
249-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]