MmuEX6025612 @ mm9
Exon Skipping
Gene
ENSMUSG00000006576 | Slc4a3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:MGI Symbol;Acc:MGI:109350]
Coordinates
chr1:75550735-75551716:+
Coord C1 exon
chr1:75550735-75550883
Coord A exon
chr1:75551077-75551271
Coord C2 exon
chr1:75551498-75551716
Length
195 bp
Sequences
Splice sites
3' ss Seq
AACCTCCTTACTATCTCTAGTTC
3' ss Score
5.8
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GAGAGAAAACAGAGGGGCTCATGGGCGTGTCAGAGCTGATTGTGTCCACGGCTGTGCTTGGGGTCCTTTTCTCTCTGCTCGGGGCCCAGCCGCTGCTCGTGGTAGGCTTCTCTGGGCCTCTGCTGGTCTTTGAAGAAGCTTTCTTCAAG
Seq A exon
TTCTGCCGAGCTCAGGACCTGGAGTACCTCACCGGTCGAGTGTGGGTGGGCCTCTGGCTGGTGGTCTTCGTCCTGGCCCTGGTGGCTGCGGAGGGCAGCTTCCTTGTCCGCTACATCTCGCCATTCACCCAGGAGATCTTTGCTTTCCTCATCTCGCTAATTTTCATCTATGAGACGTTTCACAAGCTCTACAAG
Seq C2 exon
GTGTTCACAGAGCATCCTCTGCTGCCATTCTACCCACCGGATGAGGCCCTGGAGACTGGCTTGGAACTGAATAGTAGTGCCCTGCCCCCCACAGAGGGACCACCAGGCCCGAGGAACCAACCCAACACAGCTCTGCTGTCCCTCATTCTCATGCTGGGGACGTTCCTCATTGCCTTCTTCTTGCGCAAGTTCAGGAACAGCCGCTTCCTGGGGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006576-'23-29,'23-28,24-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.151
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(24.1=100)
A:
PF0095516=HCO3_cotransp=FE(31.5=100)
C2:
PF0095516=HCO3_cotransp=PD(14.8=41.1),PF0095516=HCO3_cotransp=PU(20.0=82.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCTGATTGTGTCCACGG
R:
CAGAGCTGTGTTGGGTTGGTT
Band lengths:
254-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: