GgaEX1054461 @ galGal4
Exon Skipping
Gene
ENSGALG00000006039 | SNED1
Description
sushi, nidogen and EGF-like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
Coordinates
chr9:4403992-4404952:+
Coord C1 exon
chr9:4403992-4404270
Coord A exon
chr9:4404511-4404655
Coord C2 exon
chr9:4404870-4404952
Length
145 bp
Sequences
Splice sites
3' ss Seq
TAACTCTTTGTGGTCTGCAGTGC
3' ss Score
6.77
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGCCTCTCCCCCCTCGCAACCTCACAGCCTCCCGCGTCACCCCCACCTCTGTGTCCGTGACGTGGGAGCAGCCACCCACTGGTGCCGTGGAGGGGTACATCATCAACGTCACCACTGCGCAGAGCGTCAAGAGCCGCTACGTGCCCAACGGGAAGCTGGCGTCCTACACCGTGCGGGACCTGCTGCCCGCACAGCGCTACCGCCTGTCTGTGACAGCTGTGCAGAACACAGAGCAGGGGCAGGTGCACAGCGAGCCCATCCACCTCTACGTCACCACCC
Seq A exon
TGCAGAAGGATGGGGCTCCGGAGAGGCGCTGGAGCCAGGCTGGCCATCCCCGTGTCCTGCGCAACAGGCTGCCCCCGGCCTTCCTGCCCGAGCTCCGCTTGCTTGCAGACCATGACACAGCTGAAGAGCCCTCGCCAGCCCCCAG
Seq C2 exon
GTTCACTGAGCTGGTGGATGGCAGAAGGAGGATCAGTGCCAGGTTCGGCACTTTGCCAAGCAAATCCATCACCGTGAAGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006039-'40-46,'40-43,41-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.372 A=0.653 C2=0.379
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=86.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCAACGTCACCACTGCG
R:
CGGTGATGGATTTGCTTGGCA
Band lengths:
255-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]