DreEX6021984 @ danRer10
Exon Skipping
Gene
ENSDARG00000044433 | sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:ZFIN;Acc:ZDB-GENE-100913-1]
Coordinates
chr6:27507135-27509733:+
Coord C1 exon
chr6:27507135-27507413
Coord A exon
chr6:27507507-27507636
Coord C2 exon
chr6:27509651-27509733
Length
130 bp
Sequences
Splice sites
3' ss Seq
GTGTATCCTGTATTGTACAGTAC
3' ss Score
5.88
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GACCGCTTCCACCTCAAAATCTTTCAATCTCCCATATCACCACCACCTCTGCTCTGGTCACATGGGACCATCATCCTCAGAGTCTTCCAGATGGTTTTGTGGTCAATATTACTCGAGGTCTGAACACCCGCAGCCGATACCTACCTGGAGGAAGTTTAGGCACATACACCCTACGAGATCTCATTCCGGGACAACACTACCGACTTACCCTCACTGCTGTACGCAAAACAGGCCAGGACAGCATTCACAGCGTCCCTCAACACCTAGCCTTTGCTACAC
Seq A exon
TACCAGTAAAGAGCACTAGCAGAGGTGACAGACCTCAGGGTGGACAGGACTACCAGATGGGGCAGACTTTGACACAAGTTCAAGATGGAGGCACAGATGAGAACACAGAACTCCTTGAAGAGCCACTAAG
Seq C2 exon
ATATACAGAGCTTATCGACGGAAGGGGGAGAATTACAGCTAAATTTACCAAACTTCCACATAAAACCATCAGACACCGCATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044433-'25-32,'25-31,27-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=1.000 C2=0.466
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=85.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTCACATGGGACCATCA
R:
TCTCCCCCTTCCGTCGATAAG
Band lengths:
258-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]