MmuEX6026468 @ mm10
Exon Skipping
Gene
ENSMUSG00000047793 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:MGI Symbol;Acc:MGI:3045960]
Coordinates
chr1:93284385-93286094:+
Coord C1 exon
chr1:93284385-93284666
Coord A exon
chr1:93285796-93285940
Coord C2 exon
chr1:93286012-93286094
Length
145 bp
Sequences
Splice sites
3' ss Seq
TCCCCCTTCTTTTTTGGCAGCCC
3' ss Score
8.94
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GGCCTTTGCCACCAGCAAACCTGACTGCCTCTCGAGTCACAGCTACCTCTGCCCATATGGTCTGGGACACCCCCGCTCCAGGTATCTCACTGGAGGCTTATGTCATCAATGTGACCACAAGTCAAAGTACCAAGAGCCGCTACATCCCCAATGGGAAGCTGGTGTCCTATACAGTGCGTGATCTGATGCCAGGTCGGCGGTACCAGCTCTCAGTTACAGCTGTGCAGAGCACAGAGCAGGGCCAGCTGCACAGTGAGCCTGCACACCTCTACATCATCACCT
Seq A exon
CCCCCAGGGATGGCACCGACAGACGCTGGCACCATGGAGGACACCACTCACGGATGCTCAGAAACAGACCAGCCCCTGTGCGCCTGCCTGAGCTGCGCCTGCTCAATGACCACAGTGCCCCTGAAACACCAACTCAGTCATCCAG
Seq C2 exon
GTTCTCAGAGCTTGTAGATGGAAGAGGAAGAGTGAGTGCCAGGTTTGGTGGCTTGCCCAGCAGAGCAGTAACTGTGAGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047793-'44-48,'44-46,46-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.280 A=0.990 C2=0.632
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=86.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCCAGGTATCTCACTGGA
R:
AACCTGGCACTCACTCTTCCT
Band lengths:
254-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types