GgaEX1058186 @ galGal3
Exon Skipping
Gene
ENSGALG00000002753 | F1N8A4_CHICK
Description
NA
Coordinates
chr9:11435642-11438352:-
Coord C1 exon
chr9:11438190-11438352
Coord A exon
chr9:11437558-11437701
Coord C2 exon
chr9:11435642-11435710
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTGCATTGTTCTCTTAGCAGGCT
3' ss Score
6.26
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
TAAAAGAAGCAAAAAAGGAGACAAAAATGGGAAAGGTCTGAGGCATTTCTCCATGAAAGTATGTGAAAAAGTTCAACGTAAAGGAACAACTTCATACAATGAAGTTGCTGATGAGCTGGTATCAGAATTCACAAATTCCAACAGCCACCTAGCTGCGGATTCG
Seq A exon
GCTTATGATCAGAAAAATATTAGACGGAGAGTGTATGATGCCCTTAATGTGTTGATGGCAATGAACATAATTTCAAAGGAGAAGAAGGAAATCAGATGGATCGGCCTTCCCACAAACTCAGCTCAGGAATGTCAGAATCTAGAG
Seq C2 exon
ATAGAAAAACAGAAGCGGATTGAACGGATAAAAGAGAAGCGAGCCCAGCTACAAGAACTGCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002753-'14-14,'14-12,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(56.1=83.6)
A:
PF0231915=E2F_TDP=PD(41.5=70.8),PF087815=DP=PU(4.1=12.5)
C2:
PF087815=DP=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGGAGACAAAAATGGGAAAGGT
R:
GCAGCAGCAGTTCTTGTAGCT
Band lengths:
218-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]