HsaEX6058864 @ hg38
Exon Skipping
Gene
ENSG00000114126 | TFDP2
Description
transcription factor Dp-2 [Source:HGNC Symbol;Acc:HGNC:11751]
Coordinates
chr3:141952911-141978682:-
Coord C1 exon
chr3:141978520-141978682
Coord A exon
chr3:141974048-141974191
Coord C2 exon
chr3:141952911-141953016
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTGAAAATATTTTTTAGCAGGCT
3' ss Score
3.43
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TAAACGAAGCAAAAAAGGAGATAAAAATGGGAAAGGCTTGAGACACTTTTCAATGAAAGTGTGTGAGAAAGTTCAACGAAAAGGTACAACATCGTACAATGAAGTCGCTGATGAGCTGGTGTCAGAGTTCACCAATTCAAATAACCATTTGGCTGCTGATTCG
Seq A exon
GCTTATGATCAGAAGAACATTAGGCGAAGAGTTTATGATGCTTTAAATGTGCTAATGGCAATGAACATAATTTCAAAGGAAAAAAAAGAAATCAAGTGGATTGGCCTGCCTACCAATTCTGCTCAGGAATGTCAGAATCTGGAG
Seq C2 exon
ATATCTCCACAGGACCTTCTTGGTTAAATCAGGGACTACTTCTGAACTCTACCCAATCAGTTTCAAATTTAGACCTGACCACTGGTGCCACCTTACCCCAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114126_MULTIEX1-15/20=14-20
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.336 A=0.046 C2=0.054
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(55.4=83.6)
A:
PF0231915=E2F_TDP=PD(47.2=70.8),PF087815=DP=PU(4.2=12.5)
C2:
PF087815=DP=PD(4.9=19.4)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAAGGCTTGAGACACTT
R:
CTTGACTGGGGTAAGGTGGCA
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains