RnoEX0090093 @ rn6
Exon Skipping
Gene
ENSRNOG00000011241 | Tfdp2
Description
transcription factor Dp-2 [Source:RGD Symbol;Acc:1305814]
Coordinates
chr8:104152337-104157543:+
Coord C1 exon
chr8:104152337-104152499
Coord A exon
chr8:104154689-104154832
Coord C2 exon
chr8:104157475-104157543
Length
144 bp
Sequences
Splice sites
3' ss Seq
AATAAAAACATTTTCAGCAGGCT
3' ss Score
2.08
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TAAACGAAGCAAAAAAGGGGACAAAAATGGGAAAGGCTTGAGACATTTTTCAATGAAGGTGTGTGAGAAAGTTCAACGGAAAGGCACAACATCATACAATGAAGTAGCTGATGAACTGGTGTCTGAGTTTACCAATGCGAGTAACCATCTGGCAGCTGACTCG
Seq A exon
GCTTATGATCAGAAGAACATTAGACGAAGAGTTTATGATGCTCTGAATGTGCTAATGGCAATGAACATAATTTCAAAGGAGAAAAAAGAAATCAAGTGGATTGGGCTGCCTACCAACTCCGCCCAGGAGTGCCAGAACCTGGAA
Seq C2 exon
ATAGAGAAGCAAAGGCGGATAGAACGGATAAAGCAGAAGCGGGCCCAGCTACAAGAACTTCTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011241_MULTIEX4-6/6=5-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.039 C2=0.000
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(56.1=83.6)
A:
PF0231915=E2F_TDP=PD(41.5=70.8),PF087815=DP=PU(18.2=12.5)
C2:
PF087815=DP=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGGACAAAAATGGGAAAGGC
R:
CTGAAGGAGAAGTTCTTGTAGCTGG
Band lengths:
218-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]