GgaEX1058186 @ galGal4
Exon Skipping
Gene
ENSGALG00000025759 | TFDP2
Description
transcription factor Dp-2 [Source:RefSeq peptide;Acc:NP_001171642]
Coordinates
chr9:9836750-9839460:-
Coord C1 exon
chr9:9839298-9839460
Coord A exon
chr9:9838666-9838812
Coord C2 exon
chr9:9836750-9836818
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTGCTGCATTGTTCTCTTAGCAG
3' ss Score
4.85
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
TAAAAGAAGCAAAAAAGGAGACAAAAATGGGAAAGGTCTGAGGCATTTCTCCATGAAAGTATGTGAAAAAGTTCAACGTAAAGGAACAACTTCATACAATGAAGTTGCTGATGAGCTGGTATCAGAATTCACAAATTCCAACAGCCACCTAGCTGCGGATTCG
Seq A exon
CAGGCTTATGATCAGAAAAATATTAGACGGAGAGTGTATGATGCCCTTAATGTGTTGATGGCAATGAACATAATTTCAAAGGAGAAGAAGGAAATCAGATGGATCGGCCTTCCCACAAACTCAGCTCAGGAATGTCAGAATCTAGAG
Seq C2 exon
ATAGAAAAACAGAAGCGGATTGAACGGATAAAAGAGAAGCGAGCCCAGCTACAAGAACTGCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025759_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(56.1=83.6)
A:
PF0231915=E2F_TDP=PD(41.5=70.8),PF087815=DP=PU(4.1=12.5)
C2:
PF087815=DP=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGGAGACAAAAATGGGAAAGGT
R:
GCAGCAGCAGTTCTTGTAGCT
Band lengths:
218-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]