MmuEX0047057 @ mm10
Exon Skipping
Gene
ENSMUSG00000032411 | Tfdp2
Description
transcription factor Dp 2 [Source:MGI Symbol;Acc:MGI:107167]
Coordinates
chr9:96294965-96300440:+
Coord C1 exon
chr9:96294965-96295127
Coord A exon
chr9:96297627-96297770
Coord C2 exon
chr9:96300372-96300440
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATAAAAACATTTTTTAGCAGGCT
3' ss Score
2.54
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
TAAACGAAGCAAAAAAGGAGATAAAAATGGGAAAGGCTTGAGACATTTTTCAATGAAGGTGTGTGAGAAAGTTCAGCGGAAAGGCACAACGTCATACAATGAGGTAGCTGATGAGCTGGTATCTGAGTTTACCAACTCAAATAACCATCTGGCAGCTGATTCG
Seq A exon
GCTTATGATCAGAAGAACATTAGACGAAGAGTTTATGATGCTTTAAATGTACTAATGGCGATGAACATAATTTCAAAGGAAAAAAAAGAAATCAAGTGGATTGGCCTGCCTACCAATTCTGCTCAGGAATGCCAGAACCTGGAA
Seq C2 exon
ATCGAGAAGCAGAGGCGGATAGAACGGATAAAGCAGAAGCGAGCCCAGCTACAAGAACTTCTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032411_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.338 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(56.1=83.6)
A:
PF0231915=E2F_TDP=PD(41.5=70.8),PF087815=DP=PU(4.2=12.5)
C2:
PF087815=DP=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGGAGATAAAAATGGGAAAGGCT
R:
GAAGGAGAAGTTCTTGTAGCTGGG
Band lengths:
218-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types