GgaEX1060748 @ galGal4
Exon Skipping
Gene
ENSGALG00000004920 | TRUB2
Description
TruB pseudouridine (psi) synthase family member 2 [Source:HGNC Symbol;Acc:HGNC:17170]
Coordinates
chr17:4987924-4988490:+
Coord C1 exon
chr17:4987924-4987998
Coord A exon
chr17:4988152-4988213
Coord C2 exon
chr17:4988409-4988490
Length
62 bp
Sequences
Splice sites
3' ss Seq
CCCCGCCTCCTGTGTTACAGTGC
3' ss Score
8.7
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
TTCGAGGGCCCCGCTTCACGCAGCTGAAGATCGGCGCCGGGCACCGGCTGGACGTGAAGGCCTCGGGGGTGTTCG
Seq A exon
TGCTCGGCGTGGGCCACGGCAACAAACTCCTGAGCCACCTGTACAGCTGCCACCTGAGCAAG
Seq C2 exon
GTTTACACGGTCAGGGGGCAGTTTGGTAAAGCTACCGAGGACTTCTCGGACACGGGGAAGCTGATAGAGAAGACAACGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004920-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0150913=TruB_N=PU(14.7=84.6)
A:
PF0150913=TruB_N=FE(13.3=100)
C2:
PF0150913=TruB_N=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACGCAGCTGAAGATCGG
R:
TCTCTATCAGCTTCCCCGTGT
Band lengths:
132-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]