MmuEX0049247 @ mm10
Exon Skipping
Gene
ENSMUSG00000039826 | Trub2
Description
TruB pseudouridine (psi) synthase family member 2 [Source:MGI Symbol;Acc:MGI:2442186]
Coordinates
chr2:29782120-29785027:-
Coord C1 exon
chr2:29784953-29785027
Coord A exon
chr2:29783312-29783373
Coord C2 exon
chr2:29782120-29782201
Length
62 bp
Sequences
Splice sites
3' ss Seq
AGGGTCTGGTTGCCTTTCAGTGC
3' ss Score
7.19
5' ss Seq
AAGGTATCG
5' ss Score
8.7
Exon sequences
Seq C1 exon
TACGTGGTCCAGCATTCACAAACCTGAAGATCGGTGTGGGACATCGCTTGGATGTCCAGGCTTCTGGTGTGCTTG
Seq A exon
TGCTCGCCGTGGGACATGGACGCAGCCTCCTCACTGACATGTATGATGCTCATCTCACCAAG
Seq C2 exon
GATTACACAGTGCGTGGCCTCCTGGGCAAAGCTACAGACAACTTCTGTGAAGATGGACGGCTGATAGAGAAGACAACGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039826_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=FE(16.4=100),PF0150913=TruB_N=PU(14.7=84.6)
A:
PF0084917=PseudoU_synth_2=FE(13.2=100),PF0150913=TruB_N=FE(13.3=100)
C2:
PF0084917=PseudoU_synth_2=FE(17.8=100),PF0150913=TruB_N=FE(18.0=100)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGGTCCAGCATTCACAAA
R:
TCAGCCGTCCATCTTCACAGA
Band lengths:
138-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types