HsaEX6063216 @ hg38
Exon Skipping
Gene
ENSG00000167112 | TRUB2
Description
TruB pseudouridine synthase family member 2 [Source:HGNC Symbol;Acc:HGNC:17170]
Coordinates
chr9:128313808-128317226:-
Coord C1 exon
chr9:128317152-128317226
Coord A exon
chr9:128315567-128315628
Coord C2 exon
chr9:128313808-128313889
Length
62 bp
Sequences
Splice sites
3' ss Seq
TGACGCTGGCTGCTTTTCAGTGC
3' ss Score
6.49
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
TATGTGGACCAGCATTCGCCCATCTCAAGGTTGGCGTGGGACATCGGTTGGATGCCCAGGCTTCTGGAGTACTTG
Seq A exon
TGCTCGGCGTGGGACATGGATGCAGGCTCCTCACCGATATGTACAATGCTCATCTTACCAAG
Seq C2 exon
GATTACACAGTGCGTGGCCTCCTGGGCAAAGCTACAGATGACTTCCGTGAGGACGGGAGGCTGGTAGAGAAGACAACCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167112-'3-6,'3-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0150913=TruB_N=PU(14.7=84.6)
A:
PF0150913=TruB_N=FE(13.3=100)
C2:
PF0150913=TruB_N=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTCGCCCATCTCAAGGTT
R:
TGTCTTCTCTACCAGCCTCCC
Band lengths:
139-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains