RnoEX0094245 @ rn6
Exon Skipping
Gene
ENSRNOG00000043189 | Trub2
Description
TruB pseudouridine synthase family member 2 [Source:RGD Symbol;Acc:1359394]
Coordinates
chr3:8343550-8346370:-
Coord C1 exon
chr3:8346296-8346370
Coord A exon
chr3:8344784-8344845
Coord C2 exon
chr3:8343550-8343631
Length
62 bp
Sequences
Splice sites
3' ss Seq
AGGGTCTGGTTGCCTTTCAGTTC
3' ss Score
7.24
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
TTCGTGGTCCAGCATTCAGAAACCTGAAGATCGGTGTGGGGCATCGTTTGGATGTCCAGGCTTCTGGTGTGCTTG
Seq A exon
TTCTCGCTGTGGGACACGGACGCAGTCTCCTCACTGACATGTATGATGCTCACCTCACCAAG
Seq C2 exon
GATTACACGGTTCGTGGCCTCCTGGGCAAAGCTACAGACAACTTCTGTGAAGATGGGCAGTTGATAGAGAAGACAACATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043189-'3-8,'3-5,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=FE(13.4=100),PF0150913=TruB_N=PU(14.7=84.6)
A:
PF0084917=PseudoU_synth_2=FE(10.8=100),PF0150913=TruB_N=FE(13.3=100)
C2:
PF0084917=PseudoU_synth_2=FE(14.5=100),PF0150913=TruB_N=FE(18.0=100)
Main Skipping Isoform:
ENSRNOT00000064638fB15721
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGGTCCAGCATTCAGAAA
R:
TCAACTGCCCATCTTCACAGA
Band lengths:
138-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]