BtaEX0037908 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004663 | TRUB2
Description
Bos taurus TruB pseudouridine (psi) synthase homolog 2 (E. coli) (TRUB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001110073]
Coordinates
chr11:98923450-98926215:-
Coord C1 exon
chr11:98926141-98926215
Coord A exon
chr11:98924938-98924999
Coord C2 exon
chr11:98923450-98923531
Length
62 bp
Sequences
Splice sites
3' ss Seq
CAGGCTGGGGTACCTTTCAGTGC
3' ss Score
2.75
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
TTCGTGGACTCGCATTCACCAGCCTGAAGGTTGGCGTGGGACACCGGCTGGATTCCCAGGCGTCTGGGGTGCTTG
Seq A exon
TGCTCGGCGTGGGACATGGACGCAGGCTCCTCACTGACATGTACAACGCTCACCTCACCAAG
Seq C2 exon
GACTACACCGTGCGTGGCCTCCTGGGCAAAGCCACAGATGACTTCTGTGAGGACGGGCGGCTGGTGGAGAAGACGACGTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004663_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=FE(14.2=100),PF0150913=TruB_N=PU(23.8=92.3)
A:
PF0084917=PseudoU_synth_2=FE(11.4=100),PF0150913=TruB_N=FE(19.8=100)
C2:
PF0084917=PseudoU_synth_2=FE(15.3=100),PF0150913=TruB_N=FE(26.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTCACCAGCCTGAAGGTT
R:
CGTACGTCGTCTTCTCCACCA
Band lengths:
146-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development