HsaEX6063216 @ hg19
Exon Skipping
Gene
ENSG00000167112 | TRUB2
Description
TruB pseudouridine (psi) synthase homolog 2 (E. coli) [Source:HGNC Symbol;Acc:17170]
Coordinates
chr9:131076087-131078175:-
Coord C1 exon
chr9:131078101-131078175
Coord A exon
chr9:131077846-131077907
Coord C2 exon
chr9:131076087-131076168
Length
62 bp
Sequences
Splice sites
3' ss Seq
TGACGCTGGCTGCTTTTCAGTGC
3' ss Score
6.49
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
GTGTCAGAATCCTGTGGAGAGCTTGGCAGGGATCCTAGGCCCCCTCCAACCATGAGTCAGATTCAGTGCATATGG
Seq A exon
TGCTCGGCGTGGGACATGGATGCAGGCTCCTCACCGATATGTACAATGCTCATCTTACCAAG
Seq C2 exon
GATTACACAGTGCGTGGCCTCCTGGGCAAAGCTACAGATGACTTCCGTGAGGACGGGAGGCTGGTAGAGAAGACAACCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167112-'3-4,'3-3,4-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0150913=TruB_N=FE(13.3=100),PF0084917=PseudoU_synth_2=FE(16.9=100)
C2:
PF0150913=TruB_N=FE(18.0=100),PF0084917=PseudoU_synth_2=FE(22.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCCTGTGGAGAGCTTGGC
R:
TGTCTTCTCTACCAGCCTCCC
Band lengths:
144-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)