GgaEX1062994 @ galGal3
Exon Skipping
Gene
ENSGALG00000001915 | Q8UUX6_CHICK
Description
NA
Coordinates
chr8:1020629-1042623:-
Coord C1 exon
chr8:1042601-1042623
Coord A exon
chr8:1039490-1039535
Coord C2 exon
chr8:1020629-1020765
Length
46 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTTTGTTGTTTAGAAA
3' ss Score
7.46
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AACACGGAAACCTGAAACACGAG
Seq A exon
AAACGAACAAATGGGATTAGAAGGAACTCCAGACACGTGGACCCAG
Seq C2 exon
GTTTACCAAGAATGCAAGTAATTCGAAATTACAAAGGAATACCACAACCAACGCCACAGGATGGTCCACCTTTGCATATCCAGATTGGGGACACTATTGAACTGATTACAGGCGATGTTCATAGCTTATTTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915-'24-28,'24-27,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.938 C2=0.435
Domain overlap (PFAM):
C1:
PF144461=Prok-RING_1=PD(11.1=75.0),PF0063014=Filamin=FE(2.0=100)
A:
PF0063014=Filamin=FE(4.3=100)
C2:
PF0765312=SH3_2=PU(66.7=91.3),PF0063014=Filamin=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGGAAACCTGAAACACGA
R:
TGAACATCGCCTGTAATCAGTTCA
Band lengths:
143-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]