DreEX6026193 @ danRer10
Exon Skipping
Gene
ENSDARG00000075962 | vav3b
Description
vav 3 guanine nucleotide exchange factor b [Source:ZFIN;Acc:ZDB-GENE-070912-251]
Coordinates
chr2:16364970-16383135:-
Coord C1 exon
chr2:16383113-16383135
Coord A exon
chr2:16382769-16382802
Coord C2 exon
chr2:16364970-16365100
Length
34 bp
Sequences
Splice sites
3' ss Seq
AGTGTGTTCATATTTCACAGAGA
3' ss Score
7.38
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGCTGCAGTTCAGAAACCACAG
Seq A exon
AGAAAGACAACACCTAGAAAACAAGAAGACCCAG
Seq C2 exon
GTTTGCCAAAAATGCTGGTCATCAGAGATTATTTTGGGGTTTCCAAACCTCAAGGCGGACAAGCGTTGAATGCTCAGATTGGTGATGTCATAGAGGTCGTCTACGCTGATCCTCACAGCTCCTGGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075962-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.537 A=1.000 C2=0.027
Domain overlap (PFAM):
C1:
PF144461=Prok-RING_1=FE(14.8=100),PF0063014=Filamin=FE(5.4=100)
A:
PF144461=Prok-RING_1=PD(1.9=8.3),PF0063014=Filamin=FE(7.4=100)
C2:
PF0063014=Filamin=FE(23.2=100),PF0765312=SH3_2=PU(65.6=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCAGTTCAGAAACCACA
R:
GCGTAGACGACCTCTATGACA
Band lengths:
128-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]