GgaEX1062994 @ galGal4
Exon Skipping
Gene
ENSGALG00000001915 | VAV3
Description
guanine nucleotide exchange factor VAV3 [Source:RefSeq peptide;Acc:NP_996745]
Coordinates
chr8:1009567-1037013:-
Coord C1 exon
chr8:1036991-1037013
Coord A exon
chr8:1033880-1033925
Coord C2 exon
chr8:1009567-1009632
Length
46 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTTTGTTGTTTAGAAA
3' ss Score
7.46
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AACACGGAAACCTGAAACACGAG
Seq A exon
AAACGAACAAATGGGATTAGAAGGAACTCCAGACACGTGGACCCAG
Seq C2 exon
GGCAGAAATTTAACGACAGGAGAACTTGGCTTCTTCCCAAGTGATGCAGTGAAGCCCAGCCCTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915_MULTIEX1-17/26=16-19
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.938 C2=0.000
Domain overlap (PFAM):
C1:
PF0063014=Filamin=FE(2.0=100)
A:
PF0063014=Filamin=FE(4.3=100)
C2:
PF0063014=Filamin=FE(6.0=100),PF0765312=SH3_2=PD(30.2=86.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGGAAACCTGAAACACGA
R:
CAAGGGCTGGGCTTCACTG
Band lengths:
87-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]