RnoEX6011166 @ rn6
Exon Skipping
Gene
ENSRNOG00000020485 | Vav3
Description
vav guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:1565941]
Coordinates
chr2:212482975-212530455:+
Coord C1 exon
chr2:212482975-212483000
Coord A exon
chr2:212487509-212487554
Coord C2 exon
chr2:212530319-212530455
Length
46 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTGTTTTCCTCACAGAAG
3' ss Score
9.17
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
AACAAGGGCCATTCAAACCACCGGAG
Seq A exon
AAGCGGACCAATGGACTTCGGAGAGCTTCCAGACAGGTGGATCCAG
Seq C2 exon
GCTTGCCGAAGATGCGGGTCATTAGGAACTACACTGGCACCCCGCCCCCAGCTCTTCACGAAGGACCACCGTTGCATATCCAGGCAGGGGACACTGTTGAACTTCTGAGAGGAGAGGCACACACTGTTTTCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020485-'27-28,'27-24,28-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.750 C2=0.391
Domain overlap (PFAM):
C1:
PF0063014=Filamin=FE(3.3=100)
A:
PF0063014=Filamin=FE(6.2=100)
C2:
PF0063014=Filamin=FE(18.5=100),PF0765312=SH3_2=PU(66.7=91.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGGCCATTCAAACCACC
R:
TGTGTGCCTCTCCTCTCAGAA
Band lengths:
148-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]