BtaEX6016212 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031575 | VAV3
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr3:35715119-35773161:+
Coord C1 exon
chr3:35715119-35715144
Coord A exon
chr3:35721844-35721889
Coord C2 exon
chr3:35773025-35773161
Length
46 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTCTTTCTGCACAGAAA
3' ss Score
9.57
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
AACAAGGGACGCTCAAACCATCTGAG
Seq A exon
AAACGGACCAATGGACTCCGAAGAACCCATAGACCGGTGGATCCAG
Seq C2 exon
GTTTACCAAAGATGCAGGCTATTAGAAGCTACAGTGGAACGCCGCCCCCCGCTCTTCATGAAGGACCCCCATTACACATTCAGGCAGGGGACACAGTTGAACTTCTGAGAGGAGATGCACACAGTCTGTTTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031575-'23-29,'23-27,24-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.938 C2=0.522
Domain overlap (PFAM):
C1:
PF0063014=Filamin=FE(3.3=100),PF144461=Prok-RING_1=PD(10.9=66.7)
A:
PF0063014=Filamin=FE(6.1=100)
C2:
PF0063014=Filamin=FE(18.3=100),PF0765312=SH3_2=PU(66.7=91.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGCTCAAACCATCTGAG
R:
ACTGTGTGCATCTCCTCTCAGA
Band lengths:
146-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]