GgaEX6002433 @ galGal3
Exon Skipping
Gene
ENSGALG00000012810 | ATP6V0A4
Description
NA
Coordinates
chr1:58388708-58390295:+
Coord C1 exon
chr1:58388708-58388833
Coord A exon
chr1:58389932-58390026
Coord C2 exon
chr1:58390169-58390295
Length
95 bp
Sequences
Splice sites
3' ss Seq
ATAAAACTGATGTTTTCCAGGCA
3' ss Score
5.81
5' ss Seq
GGGGTGTGT
5' ss Score
3.14
Exon sequences
Seq C1 exon
ACAGTGCTGGAGAAACTTGAGGCTGAGCTGCTGGAAGCCAACCAGAACCAGCAAACACTGAAGCAGAACTTCCTTGAACTGATGGAACTCAAGCATCTGCTGAAGAAAACCCAGGACTTCTTTGAG
Seq A exon
GCAGAAACCAATCTGCCAGATGATTTCTTCAGTGAAGACACATCTGGCCTGCTGGAGCTGAGGACCACCCCTTCTGCTGCAGCTGCCAAGCTGGG
Seq C2 exon
ATTCACAGCAGGGGTTATAAAGAGGGAAAGGATGATACCCTTTGAGCGTTTGCTGTGGCGAGCCTGCAGGGGAAACATCTATCTGAGGTACACCGAGATGGATACCCCCCTGGAGGACCCTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012810-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.1=100)
A:
PF0149614=V_ATPase_I=FE(3.9=100)
C2:
PF0149614=V_ATPase_I=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCAACCAGAACCAGCAAA
R:
TAGATGTTTCCCCTGCAGGCT
Band lengths:
173-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]