HsaEX6010768 @ hg38
Exon Skipping
Gene
ENSG00000105929 | ATP6V0A4
Description
ATPase H+ transporting V0 subunit a4 [Source:HGNC Symbol;Acc:HGNC:866]
Coordinates
chr7:138759752-138763025:-
Coord C1 exon
chr7:138762900-138763025
Coord A exon
chr7:138762340-138762434
Coord C2 exon
chr7:138759752-138759878
Length
95 bp
Sequences
Splice sites
3' ss Seq
CATAGTGCTTTGACTTTCAGACG
3' ss Score
6.04
5' ss Seq
GGGGTTAGT
5' ss Score
2.75
Exon sequences
Seq C1 exon
ACTGTTCTAGAAAAACTGGAAGGAGAGTTACAGGAAGCCAACCAGAACCAGCAGGCCTTGAAACAAAGCTTCCTAGAACTGACAGAACTGAAATACCTCCTGAAGAAAACCCAAGACTTCTTTGAG
Seq A exon
ACGGAAACCAATTTAGCTGATGATTTCTTTACTGAGGACACTTCTGGCCTCCTGGAGTTGAAAGCAGTGCCTGCATATATGACCGGAAAGTTGGG
Seq C2 exon
GTTCATAGCCGGTGTGATCAACAGGGAGAGGATGGCTTCCTTTGAGCGGTTACTGTGGCGAATCTGCCGAGGAAACGTGTACTTGAAGTTCAGTGAGATGGACGCCCCTCTGGAGGATCCTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105929-'11-15,'11-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.1=100)
A:
PF0149614=V_ATPase_I=FE(3.8=100)
C2:
PF0149614=V_ATPase_I=FE(5.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAGCCAACCAGAACCAG
R:
ACACGTTTCCTCGGCAGATTC
Band lengths:
176-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains