DreEX6015793 @ danRer10
Exon Skipping
Gene
ENSDARG00000020847 | atp6v0a1a
Description
ATPase, H+ transporting, lysosomal V0 subunit a1a [Source:ZFIN;Acc:ZDB-GENE-030131-3027]
Coordinates
chr3:16783993-16787623:+
Coord C1 exon
chr3:16783993-16784121
Coord A exon
chr3:16785939-16786021
Coord C2 exon
chr3:16787497-16787623
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTCTCGTTCCTCCTTTTTAGATG
3' ss Score
11.55
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GCCACCTTTGAAAAACTGGAGAACGAGCTGAAGGAGATCAACACCAACCAGGAAGCCCTGAAGAAGAATTTTCTCGAGTTGACTGAGCTCAAGCACATCCTCCGACGAACGCAGCAGTTCTTTGATGAG
Seq A exon
ATGGAAGATCCTTCACTTTTGGAAGAGTCATCAACTCTACTGGACCCGAATGAAGTTGGACGGGCCGCTCCTCTCAGGCTTGG
Seq C2 exon
GTTTGTTGCGGGGGTGATAGGCAGAGAAAGGATCCCCACTTTTGAGAGGATGCTGTGGAGAGTTTGCCGTGGAAATGTGTTCCTGCGCCAAGCAGATATTGAAGACCCACTCGAAGACCCCGCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020847-'6-8,'6-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.179 C2=0.070
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.2=100)
A:
PF0149614=V_ATPase_I=FE(3.4=100)
C2:
PF0149614=V_ATPase_I=FE(5.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAACACCAACCAGGAAGCC
R:
TTTCCACGGCAAACTCTCCAC
Band lengths:
168-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]