BtaEX6028889 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004263 | ATP6V0A4
Description
ATPase, H+ transporting, lysosomal V0 subunit a4 [Source:HGNC Symbol;Acc:HGNC:866]
Coordinates
chr4:103237395-103239809:-
Coord C1 exon
chr4:103239684-103239809
Coord A exon
chr4:103238693-103238787
Coord C2 exon
chr4:103237395-103237521
Length
95 bp
Sequences
Splice sites
3' ss Seq
AGTGATTCTTTGACTTTCAGACA
3' ss Score
5.95
5' ss Seq
GGGGTCAGT
5' ss Score
3.99
Exon sequences
Seq C1 exon
ACTGCTCTAGAAAAACTGGAAGGAGAGCTTCAGGAAGCCAATCAGAACTATCAGGCTTTGAAGAAAAACTTCCTAGAACTGACGGAATTCAAACATCTCCTGAAGAAAACCCAGGACTTCTTTGAG
Seq A exon
ACAGAAGCCAACTTAGCAGATGATTTCTTTGTAGAAGACACTTCCGGTCTCCTGGAGTTGAGACCTACGCCTGCGTACATCAGTGGAAAGCTGGG
Seq C2 exon
GTTCACAGCCGGTGTGGTCAACCGGGAGAGGATGGCTTCCTTTGAGAGGCTGCTGTGGCGAATTTGCCGAGGAAACATCTACGTAAAGTTCAGTGAGATGGACACAGTTCTGGAAGATCCCGTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004263-'6-8,'6-6,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.1=100)
A:
PF0149614=V_ATPase_I=FE(3.9=100)
C2:
PF0149614=V_ATPase_I=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAAGGAGAGCTTCAGGA
R:
GCCACAGCAGCCTCTCAAAG
Band lengths:
171-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]