HsaEX6010768 @ hg19
Exon Skipping
Gene
ENSG00000105929 | ATP6V0A4
Description
ATPase, H+ transporting, lysosomal V0 subunit a4 [Source:HGNC Symbol;Acc:866]
Coordinates
chr7:138444497-138447770:-
Coord C1 exon
chr7:138447645-138447770
Coord A exon
chr7:138447085-138447179
Coord C2 exon
chr7:138444497-138444623
Length
95 bp
Sequences
Splice sites
3' ss Seq
CATAGTGCTTTGACTTTCAGACG
3' ss Score
6.04
5' ss Seq
GGGGTTAGT
5' ss Score
2.75
Exon sequences
Seq C1 exon
ACTGTTCTAGAAAAACTGGAAGGAGAGTTACAGGAAGCCAACCAGAACCAGCAGGCCTTGAAACAAAGCTTCCTAGAACTGACAGAACTGAAATACCTCCTGAAGAAAACCCAAGACTTCTTTGAG
Seq A exon
ACGGAAACCAATTTAGCTGATGATTTCTTTACTGAGGACACTTCTGGCCTCCTGGAGTTGAAAGCAGTGCCTGCATATATGACCGGAAAGTTGGG
Seq C2 exon
GTTCATAGCCGGTGTGATCAACAGGGAGAGGATGGCTTCCTTTGAGCGGTTACTGTGGCGAATCTGCCGAGGAAACGTGTACTTGAAGTTCAGTGAGATGGACGCCCCTCTGGAGGATCCTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105929-'8-12,'8-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.1=100)
A:
PF0149614=V_ATPase_I=FE(3.8=100)
C2:
PF0149614=V_ATPase_I=FE(5.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAGCCAACCAGAACCAG
R:
ACACGTTTCCTCGGCAGATTC
Band lengths:
176-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)