MmuEX6003772 @ mm10
Exon Skipping
Gene
ENSMUSG00000038600 | Atp6v0a4
Description
ATPase, H+ transporting, lysosomal V0 subunit A4 [Source:MGI Symbol;Acc:MGI:2153480]
Coordinates
chr6:38085969-38088738:-
Coord C1 exon
chr6:38088613-38088738
Coord A exon
chr6:38087930-38088020
Coord C2 exon
chr6:38085969-38086095
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTGTCTTTCAGACAGAAA
3' ss Score
3.53
5' ss Seq
GGGGTTAGT
5' ss Score
2.75
Exon sequences
Seq C1 exon
ACGACTCTAGAGAAGTTGGAAGGAGAGCTGCAGGAAGCCAACCAGAGCCACCAGGCTTTGAAGAAGAGCTTTCTGGAACTGACAGAGCTCAAATACCTCCTAAAGAAAACCCAGGACTTTTTTGAG
Seq A exon
AAACCAACTTAGGTGAAGATTTCTTTGTTGAAGACACTTCGGGTCTCTTGGAGCTAAGAACCATACCTGCCTTCATGACTGGAAAGTTGGG
Seq C2 exon
GTTCACGGCTGGTGTGATAAACAGGGAGAGGATGGCTTCCTTCGAGAGGCTGCTGTGGAGAGTTTGCCGGGGAAACGTGTACTTGAAGTTCAGTGAAATGGACACACTTCTGGAGGACCCTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038600-'20-16,'20-15,21-16
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.1=100)
A:
PF0149614=V_ATPase_I=FE(3.9=100)
C2:
PF0149614=V_ATPase_I=FE(5.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAAGGAGAGCTGCAGGAA
R:
CAAACTCTCCACAGCAGCCTC
Band lengths:
177-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types