GgaEX6036417 @ galGal4
Exon Skipping
Gene
ENSGALG00000003516 | TCIRG1
Description
V-type proton ATPase 116 kDa subunit a isoform 3 [Source:RefSeq peptide;Acc:NP_990053]
Coordinates
chr5:203282-204243:+
Coord C1 exon
chr5:203282-203511
Coord A exon
chr5:203600-203694
Coord C2 exon
chr5:204117-204243
Length
95 bp
Sequences
Splice sites
3' ss Seq
TCTGCACCCCAACACTGCAGGGC
3' ss Score
4.93
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CCTTCCTGCAGCAGGAGCTGCACGGGGCCGGGCGGGTGCTGGGGCCGTGCACCGAAAACCCTCCGGCACCGGTGGCCCGCGAGGCTCTACGAGTGCAGGAGCAATCAGAGCAGCTGGCCAGGGAGCTGCGCGAGGTCAGCCGCAACCGCGCTGCCCTGCGAGGGCGCCTGCAGGACCTGCGCCAGTACCTGCACGTCCTGCGTGAAGGCCAGCGCCTCACAAGCATGCCG
Seq A exon
GGCCCCCCTGGATCGCCGCCGTCCAGCCGGGCGTTCTCTGAGCACGAGCCGCTGCTCGACCCCTCTGTGCAACACCACCTTGACCGCAAGATCAA
Seq C2 exon
CTTTGTGACTGGTGTCATCCACCCGTGGAGAGTGAATGCCTTTGAACGGCTGCTGTGGCGAGCCTGCCGTGGCTACCTGGTGGCCAGCTTTGTGGAGATGCCTGAGCCCCTGGAGGACCCGAACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003516-'6-6,'6-3,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.299 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(9.4=100)
A:
PF0149614=V_ATPase_I=FE(3.8=100)
C2:
PF0149614=V_ATPase_I=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGCAATCAGAGCAGCTG
R:
AAAGGCATTCACTCTCCACGG
Band lengths:
178-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]