MmuEX6030324 @ mm9
Exon Skipping
Gene
ENSMUSG00000001750 | Tcirg1
Description
T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 [Source:MGI Symbol;Acc:MGI:1350931]
Coordinates
chr19:3903046-3903729:-
Coord C1 exon
chr19:3903509-3903729
Coord A exon
chr19:3903340-3903428
Coord C2 exon
chr19:3903046-3903172
Length
89 bp
Sequences
Splice sites
3' ss Seq
CAATGTCTCTTGGTGCCTAGGTG
3' ss Score
6.85
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG
Seq A exon
GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA
Seq C2 exon
TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001750-'8-9,'8-6,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.427 A=0.717 C2=0.087
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(9.1=100)
A:
PF0149614=V_ATPase_I=FE(3.6=100)
C2:
PF0149614=V_ATPase_I=FE(22.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGTTCGTGGCAATCAGC
R:
AAAGCTGGCAATGAGGAAGCC
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: