HsaEX0064212 @ hg38
Exon Skipping
Gene
ENSG00000110719 | TCIRG1
Description
T-cell immune regulator 1, ATPase H+ transporting V0 subunit a3 [Source:HGNC Symbol;Acc:HGNC:11647]
Coordinates
chr11:68042643-68043653:+
Coord C1 exon
chr11:68042643-68042863
Coord A exon
chr11:68042946-68043031
Coord C2 exon
chr11:68043571-68043653
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGGTGCTTCTGGGTTCCTAGCTG
3' ss Score
4.83
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CCTTCCTGCAGGAGGAGGTGCGGCGGGCTGGGCTGGTCCTGCCCCCGCCAAAGGGGAGGCTGCCGGCACCCCCACCCCGGGACCTGCTGCGCATCCAGGAGGAGACGGAGCGCCTGGCCCAGGAGCTGCGGGATGTGCGGGGCAACCAGCAGGCCCTGCGGGCCCAGCTGCACCAGCTGCAGCTCCACGCCGCCGTGCTACGCCAGGGCCATGAACCTCAG
Seq A exon
CTGGCAGCCGCCCACACAGATGGGGCCTCAGAGAGGACGCCCCTGCTCCAGGCCCCCGGGGGGCCGCACCAGGACCTGAGGGTCAA
Seq C2 exon
GGCGAGCCAGCCACGTGGATGACCTTCCTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGCAAGATCACGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110719_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.376 A=0.862 C2=0.080
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(26.4=100)
A:
PF0149614=V_ATPase_I=FE(10.1=100)
C2:
PF0149614=V_ATPase_I=FE(15.3=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGCTGCGGGATGTG
R:
TGCGGATCTTCTGTCCGATCT
Band lengths:
172-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development