HsaEX0064212 @ hg19
Exon Skipping
Gene
ENSG00000110719 | TCIRG1
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 [Source:HGNC Symbol;Acc:11647]
Coordinates
chr11:67810110-67811120:+
Coord C1 exon
chr11:67810110-67810330
Coord A exon
chr11:67810413-67810498
Coord C2 exon
chr11:67811038-67811120
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGGTGCTTCTGGGTTCCTAGCTG
3' ss Score
4.83
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CCTTCCTGCAGGAGGAGGTGCGGCGGGCTGGGCTGGTCCTGCCCCCGCCAAAGGGGAGGCTGCCGGCACCCCCACCCCGGGACCTGCTGCGCATCCAGGAGGAGACGGAGCGCCTGGCCCAGGAGCTGCGGGATGTGCGGGGCAACCAGCAGGCCCTGCGGGCCCAGCTGCACCAGCTGCAGCTCCACGCCGCCGTGCTACGCCAGGGCCATGAACCTCAG
Seq A exon
CTGGCAGCCGCCCACACAGATGGGGCCTCAGAGAGGACGCCCCTGCTCCAGGCCCCCGGGGGGCCGCACCAGGACCTGAGGGTCAA
Seq C2 exon
GGCGAGCCAGCCACGTGGATGACCTTCCTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGCAAGATCACGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110719_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.338 A=0.793 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(26.4=100)
A:
PF0149614=V_ATPase_I=FE(10.1=100)
C2:
PF0149614=V_ATPase_I=PU(3.4=95.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGCTGCGGGATGTG
R:
TGCGGATCTTCTGTCCGATCT
Band lengths:
172-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)