RnoEX6005917 @ rn6
Exon Skipping
Gene
ENSRNOG00000017220 | Tcirg1
Description
T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 [Source:RGD Symbol;Acc:735136]
Coordinates
chr1:219135489-219136187:-
Coord C1 exon
chr1:219135967-219136187
Coord A exon
chr1:219135788-219135876
Coord C2 exon
chr1:219135489-219135615
Length
89 bp
Sequences
Splice sites
3' ss Seq
CAATGTCTCTTGGTGACCAGATG
3' ss Score
4.14
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGCCTGACACTGACCCCACCCGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGACCGCTTGGCCCAGGAGCTTCGGGATGTTCGAGGCAACCAACAGGCACTTCGGGCCCAGCTGCACCAGCTACAGCTCCACTCAGCCGTGCTGGGCCAGAGCCACGCCCCTCCG
Seq A exon
ATGGCAGCTGTCCATACGGAGGGACCCACCACTGAGAGAACACCCCTGCTTTCAGCCACCCCAGGGCCACATGCAGACCTGAAGGTCAA
Seq C2 exon
TTTTGTGGCAGGTGCTGTGGAGCCTTGCAAGGCTGCAGCCCTGGAGCGCCTGCTTTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTAAGGAGACTGAGGGGCAGCTGGAGGACCCGGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017220-'10-6,'10-5,11-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.446 A=0.700 C2=0.116
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(9.1=100)
A:
PF0149614=V_ATPase_I=PU(6.0=83.3)
C2:
PF0149614=V_ATPase_I=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGTTCGAGGCAACCAACA
R:
AAAGCTGGCAATGAGGAAGCC
Band lengths:
182-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]