DreEX6032759 @ danRer10
Exon Skipping
Gene
ENSDARG00000016835 | tcirg1a
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3a [Source:ZFIN;Acc:ZDB-GENE-090311-31]
Coordinates
chr1:44193296-44196006:-
Coord C1 exon
chr1:44195858-44196006
Coord A exon
chr1:44193445-44193540
Coord C2 exon
chr1:44193296-44193357
Length
96 bp
Sequences
Splice sites
3' ss Seq
CATGTGTTAATGTACTGTAGGTG
3' ss Score
8.11
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AATATCTGGAGCAAGAGATCAGTCGTTCTCTCTATCCTCCTCTGAAAGGAGCTCTACCCACCGCCAGCCCAATCCCATCAGCCCCACAGCCCAGAGAGCTGCTCTGCATCGAGGAGGAGAGCGAACGACTGGCCAGAGAGCTCAGAGAG
Seq A exon
GTGTCCAGGAACAGGGACAGTCTTCGTAACCAGCTGACCCAGCTCAGCCAGTACAGAGGGGTCCTGAAGCAGAGCATTTTACTACCAACCTCACAG
Seq C2 exon
GTTCCACCTCTGACTCTTGAGACATCAGCATTACTGGACAGCAGGCAAGATATGCGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016835-'3-5,'3-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(6.2=100)
A:
PF0149614=V_ATPase_I=FE(3.9=100)
C2:
PF0149614=V_ATPase_I=FE(2.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGCAAGAGATCAGTCGT
R:
TGTCTCAAGAGTCAGAGGTGGA
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]